Department of Molecular Simulations of Polymers

Publications

Publications:
2016 | 2015 | 2014 | 2013 | 2012 | Histogram IF

Publications 2016

ADCA (Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted))
  1. BENKOVÁ, Zuzana - NÁMER, Pavol - CIFRA, Peter. Comparison of a stripe and slab confinement for ring and linear macromolecules in nanochannel. In Soft Matter, 2016, vol. 12, p. 8425-8439. (3.798 - IF2015). ISSN 1744-683X.
  2. RAWDON, Eric J. - DORIER, Julien - RAČKO, Dušan - MILLETT, Kenneth C. - STASIAK, Andrzej. How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation. In Nucleic acids research, 2016, vol. 44, no. 10, p. 4528-4538. (9.202 - IF2015). ISSN 0305-1048.
  3. BHANDARY, Debdip - BENKOVÁ, Zuzana - CORDEIRO, M. Natália D. S. - SINGH, Jayant K. Molecular dynamics study of wetting behavior of grafted thermo-responsive PNIPAAm brushes. In Soft Matter, 2016, vol. 12, p. 3093-3102. (3.798 - IF2015). ISSN 1744-683X.

Publications 2015

ADCA (Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted))
  1. RAČKO, Dušan - BENEDETTI, Fabrizio - DORIER, Julien - BURNIER, Yannis - STASIAK, Andrzej. Generation of supercoils in nicked and grapped DNA drives DNA unknotting and postreplicative decatenation. In Nucleic acids research, 2015, vol. 43, no. 15, p. 7229-7236. (9.112 - IF2014). (2015 - Current Contents). ISSN 0305-1048.
  2. PALENČÁR, Peter - BLEHA, Tomáš. Bending and kinking in helical polymers. In Journal of Polymer Science. Part B.Polymer Physics, 2015, vol. 53, p. 1345-1357. (3.830 - IF2014). (2015 - Current Contents). ISSN 0887-6266.
  3. BENKOVÁ, Zuzana - CORDEIRO, M. Natalia D. S. Molecular dynamics simulations of poly(ethylene oxide) grafted onto silica immersed in melt of homopolymers. In Langmuir, 2015, vol. 31, p. 10254-10264. (4.457 - IF2014). (2015 - Current Contents). ISSN 0743-7463.
  4. RAČKO, Dušan - CIFRA, Peter. Arm retraction and escape transition in semi-flexible star polymer under cylindrical confinement. In Journal of molecular modeling, 2015, vol. 21, art.no. 186. (1.736 - IF2014). (2015 - Current Contents). ISSN 1610-2940.
  5. PLAŠIENKA, Dušan - CIFRA, Peter - MARTOŇÁK, Roman. Structural transformation between long and short-chain form of liquid sulfur from ab initio molecular dynamics. In Journal of Chemical Physics, 2015, vol. 142, art. no. 154502. (2.952 - IF2014). (2015 - Current Contents). ISSN 0021-9606.
  6. BENEDETTI, Fabrizio - JAPARIDZE, Aleksandre - DORIER, Julien - RAČKO, Dušan - KWAPICH, Robert - BURNIER, Yannis - DIETLER, Giovanni - STASIAK, Andrzej. Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling. In Nucleic acids research, 2015, vol. 43, no. 4, p. 2390-2399. (9.112 - IF2014). (2015 - Current Contents). ISSN 0305-1048.
  7. BENKOVÁ, Zuzana - NÁMER, Pavol - CIFRA, Peter. Stripe to slab confinement for the linearization of macromolecules in nanochannels. In Soft Matter, 2015, vol. 11, p. 2279-2289. (4.029 - IF2014). (2015 - Current Contents). ISSN 1744-683X.
ADMB (Scientific papers in foreign non-impacted journals registered in Web of Sciences or Scopus)
  1. FORRÓ, Klaudia - KRUPA, Igor - RAČKO, Dušan - ŠMATKO, Vasilij - CAMPO, Eva M. - PAWLOVA, Eva - OMASTOVÁ, Mária. In situ electron microscopy of Braille microsystems: photoactuation of ethylene vinyl acetate/carbon nanotube composites. In Materials Research Express, 2015, vol. 2, art.no. 025601. (2015 - SCOPUS). ISSN 2053-1591.

Publications 2014

ADCA (Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted))
  1. PALENČÁR, Peter - BLEHA, Tomáš. Buckling transition in long alpha-helices. In Journal of Chemical Physics, 2014, vol. 141, 174901 - 12 p. (3.122 - IF2013). (2014 - Current Contents). ISSN 0021-9606.
  2. RAČKO, Dušan. The free volume of condensed phases confined in a nanopore as seen by computer simulations and compared to PALS. In Acta Physica Polonica A, 2014, vol. 125, no. 3, p. 785-788. (0.604 - IF2013). (2014 - Current Contents, WOS, SCOPUS). ISSN 1898-794X.

Publications 2013

ADCA (Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted))
  1. DANKO, Martin - ANDICSOVÁ, Anita - HRDLOVIČ, Pavol - RAČKO, Dušan - VÉGH, Daniel. Spectral characteristics of carbonyl substituted 2,2´-bithiophenes in polymer matrices and low polar solvents. In Photochemical and Photobiological Sciences, 2013, vol. 12, p. 1210 - 1219. (2.923 - IF2012). (2013 - Current Contents). ISSN 1474-905X.
  2. PALENČÁR, Peter - BLEHA, Tomáš. Gas-phase compaction of helical polymers. In Polymer : the International Journal for the Science and Technology of Polymers, 2013, vol. 54, p. 4955 - 4962. (3.379 - IF2012). (2013 - Current Contents). ISSN 0032-3861.
  3. FORRÓ, Klaudia - TORRAS, Núria - ESTEVE, Jaume - KRUPA, Igor - KASÁK, Peter - PAVLOVA, Ewa - RAČKO, Dušan - CHODÁK, Ivan - OMASTOVÁ, Mária. Nanocomposite photoactuators based on an ethylene vinyl acetate copolymer filled with carbon nanotubes. In Sensors and Actuators B-Chemical, 2013, vol. 186, p. 701 - 710. (3.535 - IF2012). (2013 - Current Contents). ISSN 0925-4005.
  4. RAČKO, Dušan - CIFRA, Peter. Segregation of semiflexible macromolecules in nanochannel. In Journal of Chemical Physics, 2013, vol. 138, art.no. 184904. (3.164 - IF2012). (2013 - Current Contents). ISSN 0021-9606.
  5. BENKOVÁ, Zuzana - CIFRA, Peter. Comparison of linear and ring DNA macromolecules moderately and strongly confined in nanochannels. In Biochemical society transactions, 2013, vol. 41, p.625 -629. (2.587 - IF2012). (2013 - Current Contents). ISSN 0300-5127.
  6. PALENČÁR, Peter - BLEHA, Tomáš. Folding of alpha-helices into bundles in long polyalanines. In Computational and Theoretical Chemistry, 2013, vol. 1006, p. 62- 69. ISSN 2210-271X.
ADMB (Scientific papers in foreign non-impacted journals registered in Web of Sciences or Scopus)
  1. RAČKO, Dušan. On the relatioship of the relative intensity I3 and a cavity number as obtained from computer simulations. In Materials Science Forum, 2013, vol. 733, p. 183-189. (2013 - WOS, SCOPUS). ISSN 0255-5476.
  2. RAČKO, Dušan - KRIŠTIAK, Jozef. The free volume dynamics. In Materials Science Forum, 2013, vol. 733, p. 33 - 37. (2013 - WOS, SCOPUS). ISSN 0255-5476.

Publications 2012

ADCA (Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted))
  1. CIFRA, Peter - BLEHA, Tomáš. Detection of chain backfolding in simulation of DNA in nanofluidic channels. In SOFT MATTER, 2012, vol. 8, p. 9022 - 9028. (4.390 - IF2011). (2012 - Current Contents). ISSN 1744-683X.
  2. BENKOVÁ, Zuzana - CIFRA, Peter. Simulation of semiflexible cyclic and linear chains moderately and strongly confined in nanochannels. In Macromolecules, 2012, vol. 45, p. 2597 - 2608. (5.167 - IF2011). (2012 - Current Contents). ISSN 0024-9297.
  3. REITH, Daniel - CIFRA, Peter - STASIAK, Andrzej - VIRNAU, Peter. Effective stiffening of DNA due to nematic ordering causes DNA molecules packed in phage capsids to preferentially form torus knots. In Nucleic acids research, 2012, vol. 22, p. 1 - 9. (8.026 - IF2011). (2012 - Current Contents). ISSN 0305-1048.
  4. BENKOVÁ, Zuzana - CORDEIRO, M. Natália D. S. Molecular dynamics study of poly(ethylene oxide) chains densely grafted on siloxane surface in dry conditions. In Journal of Physical Chemistry C, 2012, vol. 116, p. 5576 - 3584. (4.805 - IF2011). (2012 - Current Contents). ISSN 1932-7447.
  5. CIFRA, Peter - BLEHA, Tomáš. Free energy of polymers confined in open and closed cavities. In Macromolecular Theory and Simulations, 2012, vol. 21, p. 15 - 23. (1.709 - IF2011). (2012 - Current Contents). ISSN 1022-1344.
  6. CIFRA, Peter. Weak -to-strong confinement transition of semi-flexible macromolecules in slit and in channel. In Journal of Chemical Physics, 2012, vol. 136, art.no.024902. (3.333 - IF2011). (2012 - Current Contents). ISSN 0021-9606.